InteGO2 python package

InteGO2 was implemented in python 2.7, the python package can be download from here. User can compute gene similarity in their own computer by using this package.


Annotation files

# Taxon Name Taxon id DB name Download link
1 Arabidopsis thaliana 3702 TAIR download
2 Solanaceae 4081 SGN download
3 Oryza sativa 4529 GR_protein download
4 Oryza sativa 4530 GR_protein download
5 Oryza sativa 4536 GR_protein download
6 Schizosaccharomyces pombe 4896 PomBase download
7 Aspergillus nidulans 5061 AspGD download
8 Aspergillus nidulans 5062 AspGD download
9 Candida albicans 5476 CGD download
10 Candida albicans 5478 CGD download
11 Candida albicans 5480 CGD download
12 Caenorhabditis elegans 6239 WB download
13 Drosophila melanogaster 7227 FB download
14 Danio rerio 7955 ZFIN download
15 Gallus gallus 9031 UniProtKB download
16 Homo sapiens 9606 UniProtKB download
17 Canis lupus familiaris 9615 UniProtKB download
18 Sus scrofa 9823 UniProtKB download
19 Bos taurus 9913 UniProtKB download
20 Rattus norvegicus 10116 RGD download
21 Plasmodium falciparum 36329 GeneDB download
22 Candida albicans 36911 CGD download
23 Oryza sativa 39946 GR_protein download
24 Oryza sativa 39947 GR_protein download
25 Aspergillus nidulans 41063 AspGD download
26 Candida albicans 42374 CGD download
27 Dictyostelium discoideum 44689 dictyBase download
28 Aspergillus nidulans 46472 AspGD download
29 Aspergillus nidulans 75750 AspGD download
30 Escherichia coli 83333 UniProtKB download
31 Magnaporthe grisea 148305 NCBI download
32 Aspergillus nidulans 162425 AspGD download
33 Trypanosoma brucei 185431 GeneDB download
34 Dickeya dadantii 198628 ASAP download
35 Pseudomonas aeruginosa PAO1 208964 PseudoCAP download
36 Candida albicans 237561 CGD download
37 Danio rerio 243230 ZFIN download
38 Candida albicans 284592 CGD download
39 Candida albicans 294746 CGD download
40 Candida albicans 294747 CGD download
41 Candida albicans 294748 CGD download
42 Candida albicans 306902 CGD download
43 Aspergillus nidulans 331117 AspGD download
44 Aspergillus nidulans 332952 AspGD download
45 Aspergillus nidulans 341663 AspGD download
46 Aspergillus nidulans 344612 AspGD download
47 Leishmania major 347515 GeneDB download
48 Candida albicans 379508 CGD download
49 Aspergillus nidulans 451804 AspGD download
50 Saccharomyces cerevisiae 559292 SGD download
51 Aspergillus nidulans 602072 AspGD download
52 Aspergillus nidulans 690307 AspGD download
53 Aspergillus nidulans 746128 AspGD download
54 Aspergillus nidulans 767769 AspGD download
55 Aspergillus nidulans 767770 AspGD download
56 Aspergillus nidulans 1033177 AspGD download
57 Aspergillus nidulans 1073089 AspGD download
58 Candida albicans 1136231 CGD download
59 Aspergillus nidulans 1137211 AspGD download
60 Aspergillus nidulans 1160497 AspGD download